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Daily arXiv Papers

Graph Neural Networks · Graph Learning · LLM × Graph

Showing 24 papers for 2026-03-18

A federated learning framework with knowledge graph and temporal transformer for early sepsis prediction in multi-center ICUs
Knowledge Graph

This paper proposes a federated learning framework that combines a medical knowledge graph with a temporal transformer and meta-learning to enable privacy-preserving early sepsis prediction across multiple ICUs. It addresses data fragmentation and the temporal complexity of clinical data, aiming to improve predictive accuracy while preserving patient privacy.

Flood Risk Follows Valleys, Not Grids: Graph Neural Networks for Flash Flood Susceptibility Mapping in Himachal Pradesh with Conformal Uncertainty Quantification
GNN

The paper develops a Graph Neural Network trained on a watershed connectivity graph to map flash flood susceptibility in Himachal Pradesh using six years of Sentinel-1 flood inventory and 12 environmental variables. It incorporates conformal uncertainty quantification to provide reliable, downstream-aware risk maps rather than pixel-wise predictions.

Tackling Over-smoothing on Hypergraphs: A Ricci Flow-guided Neural Diffusion Approach
GNN

We show that introducing discrete Ricci flow into hypergraph neural networks can regulate node feature evolution and alleviate over-smoothing in deep HGNNs. Building on this, we propose a diffusion-based model guided by Ricci flow (RFlow) for hypergraphs to improve representation learning.

A Depth-Aware Comparative Study of Euclidean and Hyperbolic Graph Neural Networks on Bitcoin Transaction Systems
GNN

The paper provides a depth-aware comparison of Euclidean and hyperbolic GNNs on Bitcoin transaction systems, analyzing how neighborhood depth affects predictive performance for tasks such as fraud detection. Using the Elliptic dataset, it evaluates how geometry choices interact with multi-hop contexts.

RaDAR: Relation-aware Diffusion-Asymmetric Graph Contrastive Learning for Recommendation
GNN

RaDAR is a relation-aware diffusion-asymmetric graph contrastive learning framework for recommendation. It tackles issues from random edge perturbations that distort signals and data sparsity that limits signal propagation, improving robustness and generalization.

GIST: Gauge-Invariant Spectral Transformers for Scalable Graph Neural Operators
GNN

GIST introduces gauge-invariant spectral transformers for scalable graph neural operators. By avoiding expensive exact eigendecomposition and preserving gauge symmetry, it enables scalable, generalizable learning across different spectral decompositions.

ReFORM: Review-aggregated Profile Generation via LLM with Multi-Factor Attention for Restaurant Recommendation
GNN

ReFORM aggregates user decision factors from reviews into profile generation using a large language model with multi-factor attention for restaurant recommendation. It combines LLM-generated descriptions with review signals and graph-based methods to improve robustness and interpretability.

An approximate graph elicits detonation lattice
Graph Theory

The work presents an approximate graph-based method to elicit detonation lattices from 3D pressure signals, enabling accurate segmentation of detonation cells. It uses a training-free segmentation approach achieving around 2% error on generated data and yields 3D lattice measurements.

drGT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network
GNN

drGT builds a heterogeneous network across drugs, genes, and cell lines to predict drug response with attention-guided interpretability. It evaluates predictive generalization across splits and validates the biological plausibility by comparing to PubMed co-mentions and a structure-based DTI predictor.

LogicXGNN: Grounded Logical Rules for Explaining Graph Neural Networks
GNN

LogicXGNN is a post-hoc framework that grounds GNN explanations by constructing logical rules over reliable predicates derived from the model's message-passing. It aims to improve grounding quality for end users while preserving fidelity.

Out-of-Distribution Graph Models Merging
GNN

The paper studies merging graph models trained on different domains to form a generalized model. It proposes a graph generation strategy that instantiates a mixture distribution of the domains and merges backbones to create a unified model.

Scalable Feature Learning on Huge Knowledge Graphs for Downstream Machine Learning
Knowledge Graph

SEPAL is proposed for scalable feature learning on huge knowledge graphs, enabling embedding propagation beyond link prediction with improved memory efficiency. It addresses GPU memory constraints and demonstrates scalable downstream learning.

Controllable Graph Generation with Diffusion Models via Inference-Time Tree Search Guidance
Graph Learning

Controllable graph generation with diffusion models is achieved by inference-time tree search guidance, which steers sampling toward desired properties without retraining. This improves stability and allows incorporating new objectives.

AGRAG: Advanced Graph-based Retrieval-Augmented Generation for LLMs
Graph Learning

AGRAG advances graph-based retrieval-augmented generation for LLMs by addressing inaccurate graph construction, insufficient reasoning, and incomplete answers. It emphasizes explicit reasoning traces and better grounding to enhance LLM-powered QA.

Enhanced Atrial Fibrillation Prediction in ESUS Patients with Hypergraph-based Pre-training
GNN

Enhanced atrial fibrillation prediction in ESUS patients uses hypergraph-based pre-training—both supervised and unsupervised—to improve performance with small cohorts and high-dimensional features. The approach aims for improved accuracy, scalability, and cost-effectiveness.

GNNVerifier: Graph-based Verifier for LLM Task Planning
GNN

GNNVerifier proposes a graph-based verifier for LLM task planning to detect and correct potential flaws in plans generated by LLMs. This reduces reliance on unreliable LLM verification and improves plan reliability.

Predicting Biomedical Interactions with Probabilistic Model Selection for Graph Neural Networks
GNN

The paper studies probabilistic model selection for GNNs to predict biomedical interactions, focusing on selecting appropriate depth to balance neighborhood information capture. It shows improved predictive performance and mitigates over-smoothing by embracing model selection.

Masked BRep Autoencoder via Hierarchical Graph Transformer
GNN

Masked BRep Autoencoder introduces a hierarchical graph transformer for self-supervised learning on CAD BRep models. A masking strategy and a graph-based autoencoder enable reconstruction of masked geometries and attributes from large unlabeled data.

Neural-Symbolic Logic Query Answering in Non-Euclidean Space
Knowledge Graph

HYQNET develops neural-symbolic logic query answering in non-Euclidean space, decomposing first-order logic queries into relation paths and performing reasoning in hyperbolic space to capture hierarchical structures. It merges neural and symbolic reasoning for improved explainability and performance.

DynaTrust: Defending Multi-Agent Systems Against Sleeper Agents via Dynamic Trust Graphs
Graph Theory

DynaTrust presents a dynamic trust-graph approach to defend multi-agent systems against sleeper agents, which stay benign until triggered. It detects evolving adversaries and reduces false positives by updating trust graphs in real time.

Knowledge Graph Extraction from Biomedical Literature for Alkaptonuria Rare Disease
Knowledge Graph

This paper discusses extracting knowledge graphs from biomedical literature to support the ultra-rare disease alkaptonuria (AKU). AKU is caused by mutations in the HGD gene, leading to homogentisic acid (HGA) accumulation and multi-system manifestations; given the scarcity of data, knowledge graphs can integrate scattered clinical and literature information to illuminate disease mechanisms and potential interventions.

IndexRAG: Bridging Facts for Cross-Document Reasoning at Index Time
Graph Learning

IndexRAG introduces a cross-document reasoning approach that moves reasoning from online inference to offline indexing. It identifies bridge entities shared across documents and generates bridging facts as independently retrievable units, enabling cross-document multi-hop reasoning without requiring additional training or fine-tuning.

SentGraph: Hierarchical Sentence Graph for Multi-hop Retrieval-Augmented Question Answering
Graph Learning

SentGraph proposes a hierarchical sentence-level graph–based RAG framework to improve multi-hop retrieval augmented QA. Unlike chunk-based methods that produce irrelevant or incoherent context, SentGraph builds a sentence-level graph to connect evidence across documents, yielding more coherent reasoning and better answer quality.

Open Biomedical Knowledge Graphs at Scale: Construction, Federation, and AI Agent Access with Samyama Graph Database
Knowledge Graph

The paper presents three open biomedical knowledge graphs built on Samyama, a high-performance graph database, enabling construction, federation, and AI agent access at scale. It details Pathways KG (118,686 nodes, 834,785 edges from five sources), Clinical Trials KG (7,774,446 nodes, 26,973,997 edges from five sources), and Drug Interactions KG (32,726 nodes, 191,970 edges from three sources).